For more information, please see my ORCiD or Google Scholar profile.
Preprints
Genetic determinants of blood gene expression and splicing and their contribution to molecular phenotypes and health outcomes
- Alex Tokolyi, Elodie Persyn, Artika P. Nath, Katie L. Burnham, Jonathan Marten, Thomas Vanderstichele, [.. 23 more ..], Adam S. Butterworth, Michael Inouye, Emma E. Davenport, Dirk S. Paul
- medRxiv, 2023. https://doi.org/10.1101/2023.11.25.23299014
Misexpression of inactive genes in whole blood is associated with nearby rare structural variants
- Thomas Vanderstichele, Katie L Burnham, Niek de Klein, Manuel Tardaguila, Brittany Howell, Klaudia Walter, Kousik Kundu, Jonas Koeppel, Wanseon Lee,
Alex Tokolyi, Elodie Persyn, [..11 more ..], Michael Inouye, Dirk S Paul, Emma E Davenport - bioRxiv, 2023. https://doi.org/10.1101/2023.11.17.567537
Mendelian randomisation identifies alternative splicing of the FAS death receptor as a mediator of severe COVID-19
- Lucija Klaric, Jack S Gisby, Artemis Papadaki, Marisa D Muckian, Erin Macdonald-Dunlop, Jing Hua Zhao, Alex Tokolyi, Elodie Persyn, Erola Pairo-Castineira, Andrew P Morris, [.. 57 more ..], James F Wilson, James E Peters
- medRxiv, 2021. https://doi.org/10.1101/2021.04.01.21254789
Published
Linear plasmids in Klebsiella and other Enterobacteriaceae
- Jane Hawkey, Hugh Cottingham, Alex Tokolyi, Ryan R. Wick, Louise M. Judd, Louise Cerdeira, Doroti de Oliveira Garcia, Kelly L. Wyres, Kathryn E. Holt
- Microbial Genomics, 2022. https://doi.org/10.1099/mgen.0.000807
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
- Youwen Qin, Aki S. Havulinna, Yang Liu, Pekka Jousilahti, Scott C. Ritchie,
Alex Tokolyi, Jon G. Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vazquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric - Nature Genetics, 2022. https://doi.org/10.1038/s41588-021-00991-z
3D-Cardiomics: A spatial transcriptional atlas of the mammalian heart
- Monika Mohenska*, Nathalia M. Tan*, Alex Tokolyi*, Milena B. Furtado, Mauro W. Costa, Andrew J. Perry, Jessica Hatwell-Humble, Karel van Duijvenboden, Hieu T. Nim, Susan K. Nilsson, David R. Powell, Nadia A. Rosenthal, Fernando J. Rossello, Mirana Ramialison, Jose M. Polo
- JMCC, 2022. https://doi.org/10.1016/j.yjmcc.2021.09.011
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
- Kelly L Wyres, Ryan R Wick, Louise M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret MC Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt
- PLoS Genetics, 2019. https://doi.org/10.1371/journal.pgen.1008114
TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets
- Louis T Dang, Markus Tondl, Man Ho H Chiu, Jerico Revote, Benedict Paten, Vincent Tano, Alex Tokolyi, Florence Besse, Greg Quaife-Ryan, Helen Cumming, Mark J Drvodelic, Michael P Eichenlaub, Jeannette C Hallab, Julian S Stolper, Fernando J Rossello, Marie A Bogoyevitch, David A Jans, Hieu T Nim, Enzo R Porrello, James E Hudson, Mirana Ramialison
- BMC Genomics, 2018. https://doi.org/10.1186/s12864-018-4630-0